Stem-loop lus-MIR395e

Accession

MI0021228

Description

Linum usitatissimum lus-MIR395e precursor miRNA

Literature search

1 open access papers mention lus-MIR395e
(8 sentences)

Sequence

1644 reads, 319.0 reads per million, 22 experiments

accagguguccccuggaGUUCCUCUGAACGCUUCACUgaggcucuguuauggcagaugaguucaCUGAAGUGUUUGGAGGAACUCuggguguggcuuggu
(((((((..(.((((((((((((((((((((((((.((((.((((((....))))).)..)))).)))))))))))))))))))))))).)..)))))))

Structure

       gu c                        C    -g -     u 
accaggu  c ccuggaGUUCCUCUGAACGCUUCA Ugag  c ucugu a
|||||||  | |||||||||||||||||||||||| ||||  | |||||  
ugguucg  g ggguCUCAAGGAGGUUUGUGAAGU acuu  g agacg u
       gu u                        C    ga u     g 

Annotation confidence High

Genome context

Unknown

Mature lus-miR395e-5p

• Accession: MIMAT0058428
• Description: Linum usitatissimum lus-miR395e-5p mature miRNA
• Sequence: 18 - GUUCCUCUGAACGCUUCACU - 37
• Evidence: experimental ; unknown

Mature lus-miR395e-3p

• Accession: MIMAT0027208
• Description: Linum usitatissimum lus-miR395e-3p mature miRNA
• Sequence: 65 - CUGAAGUGUUUGGAGGAACUC - 85
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161