Stem-loop lus-MIR396a

Accession

MI0021227

Description

Linum usitatissimum lus-MIR396a precursor miRNA

Literature search

3 open access papers mention lus-MIR396a
(4 sentences)

Sequence

420837 reads, 59350.0 reads per million, 24 experiments

uggcucugcuuguguucUUCCACAGCUUUCUUGAACUGcauggcaaaaccagagaucucugaugcagcagcaGUUCAAUAAAGCUGUGGGAAGauacccgcagaaagcca
(((((((((..(((((.((((((((((((.(((((((((...(((....((((....)))).)))....))))))))).)))))))))))).)))))..)))))..))))

Structure

    --     uu     c            C         -aug   aaac    g 
uggc  ucugc  guguu UUCCACAGCUUU UUGAACUGc    gca    caga a
||||  |||||  ||||| |||||||||||| |||||||||    |||    ||||  
accg  agacg  cauaG AGGGUGUCGAAA AACUUGacg    cgu    gucu u
    aa     cc     A            U         acga   ---a    c 

Annotation confidence High

Genome context

Unknown

Mature lus-miR396a-5p

• Accession: MIMAT0027207
• Description: Linum usitatissimum lus-miR396a-5p mature miRNA
• Sequence: 18 - UUCCACAGCUUUCUUGAACUG - 38
• Evidence: not_experimental

Mature lus-miR396a-3p

• Accession: MIMAT0058427
• Description: Linum usitatissimum lus-miR396a-3p mature miRNA
• Sequence: 73 - GUUCAAUAAAGCUGUGGGAAG - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161