Stem-loop lus-MIR168b

Accession

MI0021226

Description

Linum usitatissimum lus-MIR168b precursor miRNA

Literature search

3 open access papers mention lus-MIR168b
(11 sentences)

Sequence

48926 reads, 10256.0 reads per million, 24 experiments

uacuugcgcucucuaauUCGCUUGGUGCAGGUCGGGAAcuaauugcuucucguccccuagauuugccgacgccaucuucucugccccguucucuuccgcugagauaugguggcugucgucgucaaggguagagcgaauuagauCCCGCCUUGCAUCAACUGAAUcggauaccgcagua
((((.(((...(((.(((((.((((((((((.(((((.((((((....(((...((((.(((..(.((((((((((.((((.((.............)).))))...)))))).)))).)))).))))..)))..)))))).))))).)))))))))).))))).)))...)))))))

Structure

    u   cuc   a     C          U     A      gcuu   guc    a   uu c    -      --u    u  cccgu 
uacu gcg   ucu auUCG UUGGUGCAGG CGGGA cuaauu    cuc   cccu gau  g cgac gccauc   ucuc gc     u
|||| |||   ||| ||||| |||||||||| ||||| ||||||    |||   |||| |||  | |||| ||||||   |||| ||     c
auga cgc   agg UAAGU AACUACGUUC GCCCu gauuaa    gag   ggga cug  c gcug cggugg   agag cg     u
    -   cau   c     C          C     a      --gc   -au    a   -- u    u      uau    u  ccuuc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR168b-5p

• Accession: MIMAT0027206
• Description: Linum usitatissimum lus-miR168b-5p mature miRNA
• Sequence: 18 - UCGCUUGGUGCAGGUCGGGAA - 38
• Evidence: experimental ; qRT-PCR [1]

Mature lus-miR168b-3p

• Accession: MIMAT0058426
• Description: Linum usitatissimum lus-miR168b-3p mature miRNA
• Sequence: 144 - CCCGCCUUGCAUCAACUGAAU - 164
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161