Stem-loop lus-MIR172f

Accession

MI0021225

Description

Linum usitatissimum lus-MIR172f precursor miRNA

Literature search

1 open access papers mention lus-MIR172f
(1 sentences)

Sequence

1237 reads, 211.0 reads per million, 24 experiments

gcgugagucguuguuugCUGGCGUGGCAUCAUCAAGAUucacaugcaaagcuucauuuugagaaauggacuguugAGAAUCUUGAUGAUGCUGCAUcggcaaucgaggacuacauac
..(((((((.(((.(((((((.((((((((((((((((((.((.....((.(((((((....)))))))))..)).)))))))))))))))))).))))))).))).)))).)))..

Structure

gc   -    g   u       C                  a  ugcaa  c       u 
  gug aguc uug uugCUGG GUGGCAUCAUCAAGAUuc ca     ag uucauuu g
  ||| |||| ||| ||||||| |||||||||||||||||| ||     || |||||||  
  uac ucag agc aacggcU CGUCGUAGUAGUUCUAAG gu     uc agguaaa a
ca   a    g   u       A                  A  ---ug  -       g 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR172f-5p

• Accession: MIMAT0058425
• Description: Linum usitatissimum lus-miR172f-5p mature miRNA
• Sequence: 18 - CUGGCGUGGCAUCAUCAAGAU - 38
• Evidence: experimental ; unknown

Mature lus-miR172f-3p

• Accession: MIMAT0027205
• Description: Linum usitatissimum lus-miR172f-3p mature miRNA
• Sequence: 76 - AGAAUCUUGAUGAUGCUGCAU - 96
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161