Stem-loop lus-MIR166d

Accession

MI0021224

Description

Linum usitatissimum lus-MIR166d precursor miRNA

Literature search

2 open access papers mention lus-MIR166d
(5 sentences)

Sequence

1325719 reads, 235034.0 reads per million, 24 experiments

guaggauguuagaguugaggGGAAUGCUGUCUGGUUCGAGAccauucauucauucaucuuuccagauaugaacgaccUCGGACCAGGCUUCAUUCCCCccaacuuccaacauuucac
((.(((((((.((((((.((((((((..((((((((((((..(.(((((......((((....))))))))).)..))))))))))))..)))))))).))))))..))))))).))

Structure

  a       -a      a        CU            Ac a     ucauuc    u 
gu ggauguu  gaguug ggGGAAUG  GUCUGGUUCGAG  c uucau      aucu u
|| |||||||  |||||| ||||||||  ||||||||||||  | |||||      ||||  
ca uuuacaa  uucaac CCCCUUAC  CGGACCAGGCUc  g aagua      uaga c
  c       cc      c        UU            ca c     ------    c 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166d-5p

• Accession: MIMAT0058424
• Description: Linum usitatissimum lus-miR166d-5p mature miRNA
• Sequence: 21 - GGAAUGCUGUCUGGUUCGAGA - 41
• Evidence: experimental ; unknown

Mature lus-miR166d-3p

• Accession: MIMAT0027204
• Description: Linum usitatissimum lus-miR166d-3p mature miRNA
• Sequence: 78 - UCGGACCAGGCUUCAUUCCCC - 98
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161