Stem-loop lus-MIR156g

Accession

MI0021221

Description

Linum usitatissimum lus-MIR156g precursor miRNA

Literature search

3 open access papers mention lus-MIR156g
(6 sentences)

Sequence

13343 reads, 2646.0 reads per million, 24 experiments

ggaucuuuguuucuggguaaggggugaaaguaaggagaaaCUGACAGAAGAGAGUGAGCACuuagagaccauuauguuauaugaaucuauaccauuguuuuuaggUGCUCACUUCUCUUUCUGUCGGCuucucauccuucuucuucuucuucuucuucuuguuuuagauuu
.(((((........(((.((((((...(((.((((((((.(((((((((((((((((((((((((((((....(((.((((......)))).))).)))))))))))))))).)))).))))))))).)))...))))))))...))))))..))).........))))).

Structure

g     -uuguuucu   -u      uga   u     ---   a         -    -                cauu   u    ug 
 gaucu         ggg  aagggg   aag aagga   gaa CUGACAGAA GAGA GUGAGCACuuagagac    aug uaua  a
 |||||         |||  ||||||   ||| |||||   ||| ||||||||| |||| ||||||||||||||||    ||| ||||   
 uuaga         ucu  uucuuc   uuc uuccu   cuu GGCUGUCUU CUCU CACUCGUggauuuuug    uac auau  a
u     uuuuguucu   uc      uuc   -     acu   C         U    U                ---u   c    cu 

Annotation confidence High

Genome context

Unknown

Mature lus-miR156g-5p

• Accession: MIMAT0027201
• Description: Linum usitatissimum lus-miR156g-5p mature miRNA
• Sequence: 41 - CUGACAGAAGAGAGUGAGCAC - 61
• Evidence: not_experimental

Mature lus-miR156g-3p

• Accession: MIMAT0058422
• Description: Linum usitatissimum lus-miR156g-3p mature miRNA
• Sequence: 106 - UGCUCACUUCUCUUUCUGUCGGC - 128
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161