Stem-loop lus-MIR169j

Accession

MI0021220

Description

Linum usitatissimum lus-MIR169j precursor miRNA

Literature search

2 open access papers mention lus-MIR169j
(10 sentences)

Sequence

258 reads, 71.0 reads per million, 23 experiments

gagagcauaggccugauaugaagauggagagaccgugguuCAGCCAAGGAUGACUUGCCGGgcggcauccugcuccgauccgguccgaucauucucggcucgauccucggcaaguuaUUCUUGGCUACAUUGCGCUCAcuuguucucauuucagaccucucuauguucuc
(((((((((((.((((.((((.((..(((.((.((((((..(((((((((((((((((((((.((((...))))..((((.((.((((......)))))).)))))))))))))))))))))))))..)))))).)).)))..)))))).)))).)))....))))))))

Structure

        ----   c    u    a  ug   a  c      uC                     cggcauccugcucc    c  u    uc 
gagagcau    agg cuga auga ga  gag ga cguggu  AGCCAAGGAUGACUUGCCGGg              gauc gg ccga  a
||||||||    ||| |||| |||| ||  ||| || ||||||  |||||||||||||||||||||              |||| || ||||   
cucuugua    ucc gacu uacu cu  uuc CU GCGUUA  UCGGUUCUUauugaacggcuc              cuag uc ggcu  u
        ucuc   a    u    -  ug   A  C      CA                     --------------    c  -    cu 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR169j-5p

• Accession: MIMAT0027200
• Description: Linum usitatissimum lus-miR169j-5p mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGG - 61
• Evidence: not_experimental

Mature lus-miR169j-3p

• Accession: MIMAT0058421
• Description: Linum usitatissimum lus-miR169j-3p mature miRNA
• Sequence: 118 - UUCUUGGCUACAUUGCGCUCA - 138
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161