Stem-loop lus-MIR169h

Accession

MI0021218

Description

Linum usitatissimum lus-MIR169h precursor miRNA

Literature search

2 open access papers mention lus-MIR169h
(10 sentences)

Sequence

561 reads, 145.0 reads per million, 24 experiments

caucguagaugcuugcaugugugaauaagggauguccaaaagCAGCCAAGGAUGACUUGCCGGcuggccgccucagccugcugcauuucucguuauguuuuuucuuucaccauuucauuuuuuuccuacuaaagcuguaaagccggccGGCAAGUCGUCUCGGGCUACUcuacucccuucuucucucaugcuacauuuuacgaug
(((((((((.....(((((.(.(((.((((((.((.....((.((((..(((((((((((((((((((.....((((.....((((........)))).....................(((........)))))))....)))))))))))))))))))..)))).))..)))))))).))).).))))).....)))))))))

Structure

         ugcuu     u u   u      u  ccaaa  C    AA                   cgccu    ------------------------------cugcu    uuc 
caucguaga     gcaug g gaa aaggga gu     ag AGCC  GGAUGACUUGCCGGcuggc     cagc                                   gcau   u
|||||||||     ||||| | ||| |||||| ||     || ||||  |||||||||||||||||||     ||||                                   ||||    
guagcauuu     cguac c cuu uucccu ca     UC UCGG  UCUGCUGAACGGccggccg     gucg                                   ugua   c
         uacau     u u   c      -  ---uc  A    GC                   -aaau    aaaucauccuuuuuuuacuuuaccacuuucuuuuu    uug 

Annotation confidence High

Genome context

Unknown

Mature lus-miR169h-5p

• Accession: MIMAT0027198
• Description: Linum usitatissimum lus-miR169h-5p mature miRNA
• Sequence: 43 - CAGCCAAGGAUGACUUGCCGG - 63
• Evidence: not_experimental

Mature lus-miR169h-3p

• Accession: MIMAT0058419
• Description: Linum usitatissimum lus-miR169h-3p mature miRNA
• Sequence: 149 - GGCAAGUCGUCUCGGGCUACU - 169
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161