Stem-loop lus-MIR390c

Accession

MI0021217

Description

Linum usitatissimum lus-MIR390c precursor miRNA

Literature search

1 open access papers mention lus-MIR390c
(22 sentences)

Sequence

21496 reads, 3281.0 reads per million, 24 experiments

cuccuucucuguuucugguuuucauaacacauaaagcauggaagaaccgguuAAGCUCAGGAGGGAUAGCGCCgaauguaacagucacgguacuccuuuggCGCUAUCCAUCCUGAGUUUCcucgcuucuucuugcuagcuagccagcuuacggacggcg
..((...(((((..((((((..............((((.(((((((.(((..((((((((((.(((((((((((((.(((.(......).)))...))))))))))))).))))))))))..))).)))))))))))....))))))...))))).))..

Structure

cu  uuc     -uu      uucauaacacauaa    u       c   uu          G             --u   a ag 
  cc   ucugu   cugguu              agca ggaagaa cgg  AAGCUCAGGA GGAUAGCGCCgaa   gua c  u
  ||   |||||   ||||||              |||| ||||||| |||  |||||||||| |||||||||||||   ||| |   
  gg   aggca   gaccga              ucgu ucuucuu gcu  UUUGAGUCCU CCUAUCGCgguuu   cau g  c
gc  --c     uuc      ----------ucga    -       c   cC          A             ccu   g ca 

Annotation confidence High

Genome context

Unknown

Mature lus-miR390c-5p

• Accession: MIMAT0027197
• Description: Linum usitatissimum lus-miR390c-5p mature miRNA
• Sequence: 53 - AAGCUCAGGAGGGAUAGCGCC - 73
• Evidence: not_experimental

Mature lus-miR390c-3p

• Accession: MIMAT0058418
• Description: Linum usitatissimum lus-miR390c-3p mature miRNA
• Sequence: 102 - CGCUAUCCAUCCUGAGUUUC - 121
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161