Stem-loop lus-MIR160f

Accession

MI0021215

Description

Linum usitatissimum lus-MIR160f precursor miRNA

Literature search

2 open access papers mention lus-MIR160f
(6 sentences)

Sequence

14223 reads, 2746.0 reads per million, 24 experiments

auggagaugauggugaagugugcaugUGCCUGGCUCCCUGUAUGCCAuucgcagagcuccaccggauucauccauggccuccguggaugGCGUAUGAGGAGCCAUGCAUAuaucuauaccuguuucaucucaucccuuuccau
((((((((((.(((((((((((.((((((.(((((((.((((((((((((((.(((..(((..(((....))).))).))).)))))))))))))).))))))).))))))...)))))....)))))))))))....)))))

Structure

     ----     u      ----     --c      C       C              a   cu   cc   u 
augga    gauga ggugaa    gugug   augUGC UGGCUCC UGUAUGCCAuucgc gag  cca  gga u
|||||    ||||| ||||||    |||||   |||||| ||||||| |||||||||||||| |||  |||  |||  
uaccu    cuacu cuacuu    cauau   uAUACG ACCGAGG GUAUGCGguaggug cuc  ggu  ccu c
     uucc     -      uguc     cua      U       A              c   -c   -a   a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR160f-5p

• Accession: MIMAT0027195
• Description: Linum usitatissimum lus-miR160f-5p mature miRNA
• Sequence: 27 - UGCCUGGCUCCCUGUAUGCCA - 47
• Evidence: not_experimental

Mature lus-miR160f-3p

• Accession: MIMAT0058417
• Description: Linum usitatissimum lus-miR160f-3p mature miRNA
• Sequence: 90 - GCGUAUGAGGAGCCAUGCAUA - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161