Stem-loop lus-MIR394b

Accession

MI0021214

Description

Linum usitatissimum lus-MIR394b precursor miRNA

Literature search

2 open access papers mention lus-MIR394b
(9 sentences)

Sequence

33200 reads, 5743.0 reads per million, 24 experiments

gguuugucaaaggguuucucacagaguucaUUGGCAUUCUGUCCACCUCCcuacggaaauccgcccaugguuacuaaggagguguggugaggugggcauacugccaacagAGCUCUGUUGGUCUCACUUUGuaaaaccuuccugauauacc
(((((..(((((.....((.(((((((((.((((((...((((((((((.(((((....((((((...)))......)))..))))).))))))))))...))))))..))))))))).)).....)))))..))))).............

Structure

-------------     gu     gguuu  c         -a      UUC          C     gaaa   ------   c 
             gguuu  caaag     cu acagaguuc  UUGGCA   UGUCCACCUC cuacg    ucc      gcc  
             |||||  |||||     || |||||||||  ||||||   |||||||||| |||||    |||      ||| a
             ccaaa  GUUUC     GG UGUCUCGAg  aaccgu   acggguggag ggugu    agg      ugg  
ccauauaguccuu     au     ACUCU  U         ac      cau          u     --gg   aaucau   u 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR394b-5p

• Accession: MIMAT0027194
• Description: Linum usitatissimum lus-miR394b-5p mature miRNA
• Sequence: 31 - UUGGCAUUCUGUCCACCUCC - 50
• Evidence: not_experimental

Mature lus-miR394b-3p

• Accession: MIMAT0058416
• Description: Linum usitatissimum lus-miR394b-3p mature miRNA
• Sequence: 111 - AGCUCUGUUGGUCUCACUUUG - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161