Stem-loop lus-MIR171g

Accession

MI0021213

Description

Linum usitatissimum lus-MIR171g precursor miRNA

Literature search

3 open access papers mention lus-MIR171g
(7 sentences)

Sequence

7836 reads, 1110.0 reads per million, 22 experiments

ugaguaaugaugauccugaagguauuggcgcggcUCAAUCGGAAGACAUGGCUAAuaauauugauaccagaugauggaugaccgaaugaguaaauauugauaagauugaugaugauuaauuagccaugugauuuUGAUUGAGCCGCGUCAAUAUCcuccucuucuacuca
((((((..((.((....((.((((((((((((((((((((((((.((((((((..(((((((..(((((.....(((....)))..)).))))))))))....(((((((....)))))))))))))))..)))))))))))))))))))))))).)).)).))))))))

Structure

      au  u  uccu  a                        -G        --------------------AA       ga   -  gauga   a 
ugagua  ga ga    ga gguauuggcgcggcUCAAUCGGAA  ACAUGGCU                      uaauauu  uac ca     ugg u
||||||  || ||    || ||||||||||||||||||||||||  ||||||||                      |||||||  ||| ||     |||  
acucau  cu cu    cu CUAUAACUGCGCCGAGUUAGUuuu  uguaccga                      guuauaa  aug gu     gcc g
      --  u  ---c  c                        ag        uuaauuaguaguaguuagaaua       --   a  ---aa   a 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR171g-5p

• Accession: MIMAT0058415
• Description: Linum usitatissimum lus-miR171g-5p mature miRNA
• Sequence: 35 - UCAAUCGGAAGACAUGGCUAA - 55
• Evidence: experimental ; unknown

Mature lus-miR171g-3p

• Accession: MIMAT0027193
• Description: Linum usitatissimum lus-miR171g-3p mature miRNA
• Sequence: 135 - UGAUUGAGCCGCGUCAAUAUC - 155
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161