Stem-loop lus-MIR166c

Accession

MI0021212

Description

Linum usitatissimum lus-MIR166c precursor miRNA

Literature search

2 open access papers mention lus-MIR166c
(5 sentences)

Sequence

1400277 reads, 246980.0 reads per million, 24 experiments

gaagcuugugucuuuuguggGGAAUGUCGUCUGGUCCAAGGcuagguagcuagcuagaauaguaguuguauuguccUCGGACCAGGCUUCAUUCCCCucaauuacucuugcuuc
(((((..(.((...(((.((((((((..(((((((((.(((.(((.((((((.(((...)))))))))..))).))).)))))))))..)))))))).)))..)).)..)))))

Structure

     uu u  cuu   u        UC         A   c   -g      g   g 
gaagc  g gu   uug ggGGAAUG  GUCUGGUCC AGG uag  uagcua cua  
|||||  | ||   ||| ||||||||  ||||||||| ||| |||  |||||| ||| a
cuucg  c ca   aac CCCCUUAC  CGGACCAGG Ucc guu  guugau gau  
     uu u  -uu   u        UU         C   u   au      -   a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166c-5p

• Accession: MIMAT0058414
• Description: Linum usitatissimum lus-miR166c-5p mature miRNA
• Sequence: 21 - GGAAUGUCGUCUGGUCCAAGG - 41
• Evidence: experimental ; unknown

Mature lus-miR166c-3p

• Accession: MIMAT0027192
• Description: Linum usitatissimum lus-miR166c-3p mature miRNA
• Sequence: 77 - UCGGACCAGGCUUCAUUCCCC - 97
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161