Stem-loop lus-MIR390b

Accession

MI0021211

Description

Linum usitatissimum lus-MIR390b precursor miRNA

Literature search

1 open access papers mention lus-MIR390b
(22 sentences)

Sequence

32262 reads, 5001.0 reads per million, 24 experiments

agcauggaagaaccgguuAAGCUCAGGAGGGAUAGCGCCauauauauggaacagucguuacagugcuucuuuuaguuuggCGCUAUCCAUCCUGAGUUUCcucgcuucuucuugcu
((((.(((((((.(((..((((((((((.(((((((((((.......((((((.(......).)).)))).......))))))))))).))))))))))..))).)))))))))))

Structure

    u       c   uu          G           uauauau    -  g cg 
agca ggaagaa cgg  AAGCUCAGGA GGAUAGCGCCa       ggaa ca u  u
|||| ||||||| |||  |||||||||| |||||||||||       |||| || |   
ucgu ucuucuu gcu  UUUGAGUCCU CCUAUCGCggu       ucuu gu a  u
    -       c   cC          A           uugauuu    c  g ca 

Annotation confidence High

Genome context

Unknown

Mature lus-miR390b-5p

• Accession: MIMAT0027191
• Description: Linum usitatissimum lus-miR390b-5p mature miRNA
• Sequence: 19 - AAGCUCAGGAGGGAUAGCGCC - 39
• Evidence: not_experimental

Mature lus-miR390b-3p

• Accession: MIMAT0058413
• Description: Linum usitatissimum lus-miR390b-3p mature miRNA
• Sequence: 81 - CGCUAUCCAUCCUGAGUUUC - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161