Stem-loop lus-MIR167i

Accession

MI0021210

Description

Linum usitatissimum lus-MIR167i precursor miRNA

Literature search

3 open access papers mention lus-MIR167i
(5 sentences)

Sequence

106602 reads, 17599.0 reads per million, 24 experiments

caugcaccaguggcaguUGAAGCUGCCAGCAUGAUCUGgauuuucccuugaauauuuuagcaccauucauucauguaugggagagacuAGAUCAUAUGGCAGCUUCACCuguucauggugggcaug
(((((((((..(((((.(((((((((((..(((((((((.(((((((.(((((...............))))).....))))))).))))))))).))))))))))).)))))..))))..)))))

Structure

     --    gu     u           GC         a       ----u     auuuua 
caugc  acca  ggcag UGAAGCUGCCA  AUGAUCUGg uuuuccc     ugaau      g
|||||  ||||  ||||| |||||||||||  ||||||||| |||||||     |||||      c
guacg  uggu  uuguC ACUUCGACGGU  UACUAGAuc gagaggg     acuua      a
     gg    ac     C           -A         a       uaugu     cuuacc 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR167i-5p

• Accession: MIMAT0027190
• Description: Linum usitatissimum lus-miR167i-5p mature miRNA
• Sequence: 18 - UGAAGCUGCCAGCAUGAUCUG - 38
• Evidence: not_experimental

Mature lus-miR167i-3p

• Accession: MIMAT0058412
• Description: Linum usitatissimum lus-miR167i-3p mature miRNA
• Sequence: 89 - AGAUCAUAUGGCAGCUUCACC - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161