Stem-loop lus-MIR160e

Accession

MI0021209

Description

Linum usitatissimum lus-MIR160e precursor miRNA

Literature search

2 open access papers mention lus-MIR160e
(6 sentences)

Sequence

14201 reads, 2742.0 reads per million, 24 experiments

ggauggaugaugaacugugcaugUGCCUGGCUCCCUGUAUGCCAuucgcagagcuccaacggauucauccauggccuccguggaugGCGUAUGAGGAGCCAUGCAUAuaucuaccuaccuuuucaucucaucaucccuuucc
(((.(((((((((..((...((((((.(((((((.((((((((((((((.(((..(((..(((....))).))).))).)))))))))))))).))))))).))))))...............))..)))))))))...)))

Structure

   --u         ac  ------------ugc      C       C              a   cu   ac   u 
gga   ggaugauga  ug               augUGC UGGCUCC UGUAUGCCAuucgc gag  cca  gga u
|||   |||||||||  ||               |||||| ||||||| |||||||||||||| |||  |||  |||  
ccu   ccuacuacu  ac               uAUACG ACCGAGG GUAUGCGguaggug cuc  ggu  ccu c
   uuc         cu  uuuuccauccaucua      U       A              c   -c   -a   a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR160e-5p

• Accession: MIMAT0027189
• Description: Linum usitatissimum lus-miR160e-5p mature miRNA
• Sequence: 24 - UGCCUGGCUCCCUGUAUGCCA - 44
• Evidence: not_experimental

Mature lus-miR160e-3p

• Accession: MIMAT0058411
• Description: Linum usitatissimum lus-miR160e-3p mature miRNA
• Sequence: 87 - GCGUAUGAGGAGCCAUGCAUA - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161