Stem-loop lus-MIR162b

Accession

MI0021207

Description

Linum usitatissimum lus-MIR162b precursor miRNA

Literature search

2 open access papers mention lus-MIR162b
(3 sentences)

Sequence

159453 reads, 23741.0 reads per million, 24 experiments

gugucugaaggguugugaagagggagggaacacacggaguuuGGAGGCAGCGGUUCAUCGAUCucuucaugguuuauguggguucauccgaucacaaaaacacgugaaucgaUCGAUAAACCUCUGCAUCCAGcaaccccccuaguuucucccuuccuaccuucucau
.....((((((((.(.((..(((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..........))))).)))).))))))..))))))).)))).)))).))))..)))))......)))))))))))).))))).))).

Structure

guguc   -     u u  ag         acacac  a   --    G    C    C       uc      -    a     guuc 
     uga agggu g ga  agggaggga      gg guu  uGGA GCAG GGUU AUCGAUC  uucaug guuu ugugg    a
     ||| ||||| | ||  |||||||||      || |||  |||| |||| |||| |||||||  |||||| |||| |||||     
     acu uucca c cu  ucccucuuu      cc caa  ACCU CGUC CCAA UAGCUag  aagugc caaa acacu    u
----u   c     u -  --         gauccc  -   cG    A    U    A       cu      a    a     agcc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR162b-5p

• Accession: MIMAT0058410
• Description: Linum usitatissimum lus-miR162b-5p mature miRNA
• Sequence: 43 - GGAGGCAGCGGUUCAUCGAUC - 63
• Evidence: experimental ; unknown

Mature lus-miR162b-3p

• Accession: MIMAT0027187
• Description: Linum usitatissimum lus-miR162b-3p mature miRNA
• Sequence: 113 - UCGAUAAACCUCUGCAUCCAG - 133
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161