Stem-loop lus-MIR156f

Accession

MI0021206

Description

Linum usitatissimum lus-MIR156f precursor miRNA

Literature search

3 open access papers mention lus-MIR156f
(6 sentences)

Sequence

11494 reads, 2084.0 reads per million, 24 experiments

ggguugagagcucuuuugggggauguugUUGACAGAAGAUAGAGAGCACAgaugaugggauacaauugauaguauacauaucucacuuccuuuguGCUCUCUAUGCUUCUGUCAUCAucuuuucgagcggccuccucgaucc
((((((((.(((.(((.((((((((....(((((((((((((((((((((((.(((((((((................)))))))..)).)))))))))))))).))))))))).)))))))).))).)))...))))))))

Structure

        --a   c   u        uugU         -              u  --       caauuga 
ggguugag   gcu uuu gggggaug    UGACAGAAG AUAGAGAGCACAga ga  ugggaua       u
||||||||   ||| ||| ||||||||    ||||||||| |||||||||||||| ||  |||||||        
ccuagcuc   cgg gag uuuucuAC    ACUGUCUUC UAUCUCUCGuguuu cu  acucuau       a
        cuc   c   c        ---U         G              c  uc       acauaug 

Annotation confidence High

Genome context

Unknown

Mature lus-miR156f-5p

• Accession: MIMAT0027186
• Description: Linum usitatissimum lus-miR156f-5p mature miRNA
• Sequence: 29 - UUGACAGAAGAUAGAGAGCACA - 50
• Evidence: not_experimental

Mature lus-miR156f-3p

• Accession: MIMAT0058409
• Description: Linum usitatissimum lus-miR156f-3p mature miRNA
• Sequence: 96 - GCUCUCUAUGCUUCUGUCAUCA - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161