Stem-loop lus-MIR168a

Accession

MI0021205

Description

Linum usitatissimum lus-MIR168a precursor miRNA

Literature search

3 open access papers mention lus-MIR168a
(15 sentences)

Sequence

34055 reads, 6819.0 reads per million, 24 experiments

ugucuguguguguuacuugcguucucugauUCGCUUGGUGCAGGUCGGGAAcugauugcguuucucccugccggcauccgacugcugcugucgccaguggguuagaaacaaauuggauCCUGCCUUGCGUCAACUGAAUcggcgacugcagugaauuugccggaga
..((((.((...(((((.(((.((.((((((((.((((((((((.(((((.((((((..((((((.(((((.(((....(((.......)))))).)))))..)))))).)))))).))))).)))))))))).)))))))).)).))))))))....))))))..

Structure

ug    u  -gug     u   u  u        C          U     A      gc      -c     c   aucc   ug 
  ucug gu    uuacu gcg uc cugauUCG UUGGUGCAGG CGGGA cugauu  guuucu  ccugc ggc    gac  c
  |||| ||    ||||| ||| || |||||||| |||||||||| ||||| ||||||  ||||||  ||||| |||    |||  u
  aggc cg    aguga cgu ag ggcUAAGU AACUGCGUUC GUCCu gguuaa  caaaga  gggug ccg    cug  g
ag    -  uuua     -   c  c        C          C     a      -a      uu     a   ----   uc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR168a-5p

• Accession: MIMAT0027185
• Description: Linum usitatissimum lus-miR168a-5p mature miRNA
• Sequence: 31 - UCGCUUGGUGCAGGUCGGGAA - 51
• Evidence: not_experimental

Mature lus-miR168a-3p

• Accession: MIMAT0058408
• Description: Linum usitatissimum lus-miR168a-3p mature miRNA
• Sequence: 119 - CCUGCCUUGCGUCAACUGAAU - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161