Stem-loop lus-MIR156e

Accession

MI0021204

Description

Linum usitatissimum lus-MIR156e precursor miRNA

Literature search

3 open access papers mention lus-MIR156e
(6 sentences)

Sequence

11561 reads, 2117.0 reads per million, 24 experiments

ggaaggauaaggauuguuguugUUGACAGAAGAUAGAGAGCACAgaugaugaaauacuguagugaaaguaucucacuuuccuuuguGCUCCCUAUGCUUCUGUCAUCAcaugcaccuuccuuuc
(((((((..(((..((((((.(.(((((((((((((.(((((((((.(((((.(((((........))))).)))...)).))))))))).)))).))))))))).)))).)))))))))))))

Structure

       ua   au   -   u U         -    A         u  ---   a     gua 
ggaagga  agg  ugu ugu g UGACAGAAG AUAG GAGCACAga ga   uga auacu   g
|||||||  |||  ||| ||| | ||||||||| |||| ||||||||| ||   ||| |||||    
cuuuccu  ucc  acg acA C ACUGUCUUC UAUC CUCGuguuu cu   acu uauga   u
       --   --   u   - U         G    C         c  uuc   c     aag 

Annotation confidence High

Genome context

Unknown

Mature lus-miR156e-5p

• Accession: MIMAT0027184
• Description: Linum usitatissimum lus-miR156e-5p mature miRNA
• Sequence: 23 - UUGACAGAAGAUAGAGAGCACA - 44
• Evidence: not_experimental

Mature lus-miR156e-3p

• Accession: MIMAT0058407
• Description: Linum usitatissimum lus-miR156e-3p mature miRNA
• Sequence: 87 - GCUCCCUAUGCUUCUGUCAUCA - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161