Stem-loop lus-MIR164d

Accession

MI0021203

Description

Linum usitatissimum lus-MIR164d precursor miRNA

Literature search

2 open access papers mention lus-MIR164d
(3 sentences)

Sequence

82637 reads, 13505.0 reads per million, 24 experiments

gggcgggcagcuccuugcUGGAGAAGCAGGGCACGUGCAagaaaggugcaacauuuugcuugCACGUGCUCCCCUUCUCCAACAugggcuccucaccu
((..(((.(((.((.((.((((((((..(((((((((((((.((((((...)))))).)))))))))))))..)))))))).)).))))))))..)).

Structure

-  gc   c   u  u  c        CA             a      c 
 gg  ggg agc cc ug UGGAGAAG  GGGCACGUGCAag aaggug  
 ||  ||| ||| || || ||||||||  ||||||||||||| |||||| a
 cc  ucc ucg gg AC ACCUCUUC  CUCGUGCACguuc uuuuac  
u  ac   -   -  u  A        CC             g      a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR164d-5p

• Accession: MIMAT0027183
• Description: Linum usitatissimum lus-miR164d-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: not_experimental

Mature lus-miR164d-3p

• Accession: MIMAT0058406
• Description: Linum usitatissimum lus-miR164d-3p mature miRNA
• Sequence: 63 - CACGUGCUCCCCUUCUCCAACA - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161