Stem-loop lus-MIR159a

Accession

MI0021202

Description

Linum usitatissimum lus-MIR159a precursor miRNA

Literature search

2 open access papers mention lus-MIR159a
(4 sentences)

Sequence

1027 reads, 156.0 reads per million, 18 experiments

GAGCUCUCUUCACUCCAUUUCugaaaggaggugauagguaugccauggcuagcagguucaugauuaccccuagccauuagucgaguuugaagagcguaggcuacggguucgcaugagucugggaggcauggcuacucugaucuuuuuggcAUUGGAGUGAAGGGAGCUCGA
(((((((((((((((((...(((((((((...((...(((.((((((.((..((((((((((...((((.(((((.....((.........)).....))))).))))...))))))))))..)).)))))))))))...)))))))))...)))))))))))))))))..

Structure

--                 UUU         ggu  uag   u      g  ag          auu    c     auuag  gag 
  GAGCUCUCUUCACUCCA   Cugaaagga   ga   gua gccaug cu  cagguucaug   accc uagcc     uc   u
  |||||||||||||||||   |||||||||   ||   ||| |||||| ||  ||||||||||   |||| |||||     ||   u
  CUCGAGGGAAGUGAGGU   gguuuuucu   cu   cau cgguac ga  gucugaguac   uggg aucgg     ag   u
AG                 UAc         agu  ---   -      g  gg          gcu    c     augcg  aag 

Annotation confidence High

Genome context

Unknown

Mature lus-miR159a-5p

• Accession: MIMAT0058405
• Description: Linum usitatissimum lus-miR159a-5p mature miRNA
• Sequence: 1 - GAGCUCUCUUCACUCCAUUUC - 21
• Evidence: experimental ; unknown

Mature lus-miR159a-3p

• Accession: MIMAT0027182
• Description: Linum usitatissimum lus-miR159a-3p mature miRNA
• Sequence: 151 - AUUGGAGUGAAGGGAGCUCGA - 171
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161