Stem-loop lus-MIR156c

Accession

MI0021199

Description

Linum usitatissimum lus-MIR156c precursor miRNA

Literature search

3 open access papers mention lus-MIR156c
(6 sentences)

Sequence

12739 reads, 2326.0 reads per million, 24 experiments

gguuugUUGACAGAAGAUAGAGAGCACAgaugauuuugggaugucgucaaaccccacaucgccaucauuuguGCUCUCUAUGUUUCUGUCAUCAcuuuc
....((.((((((((((((((((((((((((((...((((((((.(........)))))).)))))))))))))))))))).))))))))).)).....

Structure

-gguu  U         -                 uuu   -     c uca 
     ug UGACAGAAG AUAGAGAGCACAgauga   ugg gaugu g   a
     || ||||||||| |||||||||||||||||   ||| ||||| |    
     AC ACUGUCUUU UAUCUCUCGuguuuacu   acc cuaca c   a
cuuuc  U         G                 ---   g     - ccc 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR156c-5p

• Accession: MIMAT0027179
• Description: Linum usitatissimum lus-miR156c-5p mature miRNA
• Sequence: 7 - UUGACAGAAGAUAGAGAGCACA - 28
• Evidence: not_experimental

Mature lus-miR156c-3p

• Accession: MIMAT0058404
• Description: Linum usitatissimum lus-miR156c-3p mature miRNA
• Sequence: 73 - GCUCUCUAUGUUUCUGUCAUCA - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161