Stem-loop lus-MIR156i

Accession

MI0021198

Description

Linum usitatissimum lus-MIR156i precursor miRNA

Literature search

3 open access papers mention lus-MIR156i
(6 sentences)

Sequence

11618 reads, 2105.0 reads per million, 24 experiments

auaugaaggaaagagguggauuuggauauauugguugUUGACAGAAGAUAGAGAGCACAgaugaucugggaugucucgaaccauauauauauauaucugcaucuccauccuuuguGCUCUCUAGUCUUCUGUCAUCAccuucauccauccuagcuuucuuuugugu
(((((((((((((....(((..(((((.....(((.(.(((((((((((((((((((((((.(((..(((((((...((...((((....)))).)).))))))).))).)))))))))))).))))))))))).))))...))))))))...)))))))))))))

Structure

             aggu   uu     auauu   u U           -            u   cu       cuc  acc    a 
auaugaaggaaag    gga  uggau     ggu g UGACAGAAGAU AGAGAGCACAga gau  gggaugu   ga   auau u
|||||||||||||    |||  |||||     ||| | ||||||||||| |||||||||||| |||  |||||||   ||   ||||  
uguguuuucuuuc    ccu  accua     ccA C ACUGUCUUCUG UCUCUCGuguuu cua  cucuacg   cu   uaua a
             -gau   --     --cuu   - U           A            c   -c       --u  --a    u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR156i-5p

• Accession: MIMAT0027178
• Description: Linum usitatissimum lus-miR156i-5p mature miRNA
• Sequence: 38 - UUGACAGAAGAUAGAGAGCACA - 59
• Evidence: not_experimental

Mature lus-miR156i-3p

• Accession: MIMAT0058403
• Description: Linum usitatissimum lus-miR156i-3p mature miRNA
• Sequence: 116 - GCUCUCUAGUCUUCUGUCAUCA - 137
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161