Stem-loop lus-MIR167h

Accession

MI0021197

Description

Linum usitatissimum lus-MIR167h precursor miRNA

Literature search

3 open access papers mention lus-MIR167h
(5 sentences)

Sequence

61749 reads, 10782.0 reads per million, 24 experiments

uuguccacaagggaagcagUGAAGCUGCCAGCAUGAUCUagcuuuggcuaguuugcaacgaaaguaaaaugagauaguaguagugagcuagcccuagcuaggUCAUGCUAUGACAGCCUCAUUccuucccaauguggggga
((.((((((.((((((.(((((.(((((.((((((((((((((..(((((((((((.((....................)).)))))))))))..))))))))))))))..).)))).))))).))))))..)))))).))

Structure

  g      -a      c     A    - -C              uu           a  gaaaguaaa 
uu uccaca  gggaag agUGA GCUG C  AGCAUGAUCUagcu  ggcuaguuugc ac         a
|| ||||||  |||||| ||||| |||| |  ||||||||||||||  ||||||||||| ||          
ag gggugu  cccuuc UUACU CGAC G  UCGUACUggaucga  ccgaucgagug ug         u
  g      aa      c     C    A UA              uc           a  augauagag 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR167h-5p

• Accession: MIMAT0027177
• Description: Linum usitatissimum lus-miR167h-5p mature miRNA
• Sequence: 20 - UGAAGCUGCCAGCAUGAUCU - 39
• Evidence: experimental ; qRT-PCR [1]

Mature lus-miR167h-3p

• Accession: MIMAT0058402
• Description: Linum usitatissimum lus-miR167h-3p mature miRNA
• Sequence: 103 - UCAUGCUAUGACAGCCUCAUU - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161