Stem-loop lus-MIR167g

Accession

MI0021196

Description

Linum usitatissimum lus-MIR167g precursor miRNA

Literature search

3 open access papers mention lus-MIR167g
(5 sentences)

Sequence

104759 reads, 17283.0 reads per million, 24 experiments

ggugcugucuguguuguguuggagucagagguUGAAGCUGCCAGCAUGAUCUGgguuuucugaugaaggaauucAGGUCAUCUGGCAGCUUCACUcacucacuuccaucacccucauuuagccuucc
((.((((...(((..(((.((((((.((.((.((((((((((((.(((((((((((((.((.....))))))))))))))))))))))))))).)).)).)).)))).)))...))).))))))...

Structure

---  u    ucu   -uu   u    -  c  a  u            C             u  g 
   gg gcug   gug   gug ugga gu ag gg UGAAGCUGCCAG AUGAUCUGgguuu cu a
   || ||||   |||   ||| |||| || || || |||||||||||| ||||||||||||| || u
   uc cgau   uac   cac accu ca uc cU ACUUCGACGGUC UACUGGAcuuaag ga g
ccu  -    --u   ucc   u    u  c  a  C            -             -  a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR167g-5p

• Accession: MIMAT0027176
• Description: Linum usitatissimum lus-miR167g-5p mature miRNA
• Sequence: 33 - UGAAGCUGCCAGCAUGAUCUG - 53
• Evidence: not_experimental

Mature lus-miR167g-3p

• Accession: MIMAT0058401
• Description: Linum usitatissimum lus-miR167g-3p mature miRNA
• Sequence: 75 - AGGUCAUCUGGCAGCUUCACU - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161