Stem-loop lus-MIR167f

Accession

MI0021195

Description

Linum usitatissimum lus-MIR167f precursor miRNA

Literature search

3 open access papers mention lus-MIR167f
(5 sentences)

Sequence

104339 reads, 17217.0 reads per million, 24 experiments

gucuguguuguguuggagucagagguUGAAGCUGCCAGCAUGAUCUGgguuuucugaugaaggaauucAGGUCAUCUGACAGCUUCACUcacucacuuccaucaccuucuuuaacucgcuggcaggggc
((((.(((((((.((((((.((.((.((((((((.(((.(((((((((((((.((.....)))))))))))))))))).)))))))).)).)).)).)))).)))...............)))).))))

Structure

    g    ---------------   u    -  c  a  u        C   C             u  g 
gucu uguu               gug ugga gu ag gg UGAAGCUG CAG AUGAUCUGgguuu cu a
|||| ||||               ||| |||| || || || |||||||| ||| ||||||||||||| || u
cggg acgg               cac accu ca uc cU ACUUCGAC GUC UACUGGAcuuaag ga g
    g    ucgcucaauuucuuc   u    u  c  a  C        A   -             -  a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR167f-5p

• Accession: MIMAT0027175
• Description: Linum usitatissimum lus-miR167f-5p mature miRNA
• Sequence: 27 - UGAAGCUGCCAGCAUGAUCUG - 47
• Evidence: not_experimental

Mature lus-miR167f-3p

• Accession: MIMAT0058400
• Description: Linum usitatissimum lus-miR167f-3p mature miRNA
• Sequence: 69 - AGGUCAUCUGACAGCUUCACU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161