Stem-loop lus-MIR172e

Accession

MI0021194

Description

Linum usitatissimum lus-MIR172e precursor miRNA

Literature search

1 open access papers mention lus-MIR172e
(1 sentences)

Sequence

9680 reads, 1743.0 reads per million, 24 experiments

ggguucacaacaauaacagccacugcuugcuauuGGAGCAUCAUCAAGAUUCACAaacccacaaaggcaaaguuaaaauaaaagagcuuaucuuuauaagcuuuuuuuuuuucacuuuugcccaaaucauucaugggcggggguauugGGAAUCUUGAUGAUGCUGCAGcggcaaucacugccuaccu
((((.............((.((.((.(((((.(((.((((((((((((((((.(((((((........(((((.((((.((((((((((((....)))))))))))).)))).)))))((((((.........)))))).)))).))).)))))))))))))))).))).))))).)).)).))))))

Structure

    ucacaacaauaac  c  c  c     a   G                A   -    --------------acaaaggc     u    u            c 
gggu             ag ca ug uugcu uuG AGCAUCAUCAAGAUUC CAa accc                      aaagu aaaa aaaagagcuuau u
||||             || || || ||||| ||| |||||||||||||||| ||| ||||                      ||||| |||| ||||||||||||  
ucca             uc gu ac aacgg GAC UCGUAGUAGUUCUAAG guu uggg                      uuuca uuuu uuuuuucgaaua u
    -------------  c  c  u     c   G                G   a    ggcggguacuuacuaaacccgu     c    u            u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR172e-5p

• Accession: MIMAT0058399
• Description: Linum usitatissimum lus-miR172e-5p mature miRNA
• Sequence: 35 - GGAGCAUCAUCAAGAUUCACA - 55
• Evidence: experimental ; unknown

Mature lus-miR172e-3p

• Accession: MIMAT0027174
• Description: Linum usitatissimum lus-miR172e-3p mature miRNA
• Sequence: 149 - GGAAUCUUGAUGAUGCUGCAG - 169
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161