Stem-loop lus-MIR393a

Accession

MI0021193

Description

Linum usitatissimum lus-MIR393a precursor miRNA

Literature search

2 open access papers mention lus-MIR393a
(26 sentences)

Sequence

12475 reads, 2222.0 reads per million, 24 experiments

aagaauggagaagaaagaagguuuccugcaacuagaggaggcaUCCAAAGGGAUCGCAUUGAUCccagcuacccaccuaccuaaccaaauucauagucuuggAUCGUGCUAUCCCUUUGGAUUucuccuuugguagcuuuguguugugugcuuuucucucaacucuu
((((...((((.(((((.(((...)))((.(((((((((((.((((((((((((.((((.(((((.(((((......................))).)).))))))))).)))))))))))).))))))))))).)).............))))).))))...))))

Structure

    aug    a     ---aagguuuccu  a           c            C    U     c  -   cccaccuacc 
aaga   gaga gaaag             gc acuagaggagg aUCCAAAGGGAU GCAU GAUCc ag cua          u
||||   |||| |||||             || ||||||||||| |||||||||||| |||| ||||| || |||           
uucu   cucu uuuuc             cg ugguuuccucu UAGGUUUCCCUA CGUG CUAgg uc gau          a
    caa    c     guguguuguguuu  a           U            U    -     u  u   acuuaaacca 

Annotation confidence High

Genome context

Unknown

Mature lus-miR393a-5p

• Accession: MIMAT0027173
• Description: Linum usitatissimum lus-miR393a-5p mature miRNA
• Sequence: 44 - UCCAAAGGGAUCGCAUUGAUC - 64
• Evidence: experimental ; Illumina [1]

Mature lus-miR393a-3p

• Accession: MIMAT0058398
• Description: Linum usitatissimum lus-miR393a-3p mature miRNA
• Sequence: 103 - AUCGUGCUAUCCCUUUGGAUU - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161