Stem-loop lus-MIR166b

Accession

MI0021192

Description

Linum usitatissimum lus-MIR166b precursor miRNA

Literature search

2 open access papers mention lus-MIR166b
(5 sentences)

Sequence

19809 reads, 3324.0 reads per million, 24 experiments

guaggauguuacaguugaggGGAAUGCUGUCUGGUUCGAGAccauucauucauugaauuauauucuuccuuccagauaugaacgaccUCGGACCAGGCUUCAUCCCCCccaacuuccacccuc
..(((.((....(((((.((((.(((..((((((((((((..(.(((((.....(((............))).....))))).)..))))))))))))..))).)))).)))))..)).))).

Structure

gu   a  uuac     a    A   CU            Ac a     ucauu   uuaua 
  agg ug    aguug ggGG AUG  GUCUGGUUCGAG  c uucau     gaa     u
  ||| ||    ||||| |||| |||  ||||||||||||  | |||||     |||      
  ucc ac    ucaac CCCC UAC  CGGACCAGGCUc  g aagua     cuu     u
-c   c  --cu     c    C   UU            ca c     uagac   ccuuc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166b-5p

• Accession: MIMAT0058397
• Description: Linum usitatissimum lus-miR166b-5p mature miRNA
• Sequence: 21 - GGAAUGCUGUCUGGUUCGAGA - 41
• Evidence: experimental ; unknown

Mature lus-miR166b-3p

• Accession: MIMAT0027172
• Description: Linum usitatissimum lus-miR166b-3p mature miRNA
• Sequence: 88 - UCGGACCAGGCUUCAUCCCCC - 108
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161