Accession
MI0021191
Description
Linum usitatissimum
lus-MIR160d precursor miRNA
Literature search
2 open access papers mention lus-MIR160d
(6 sentences)
(6 sentences)
Sequence
14899
reads,
2928.0
reads per million, 24 experiments
gcuagcuaagguggcggugguggguggugguggugguguugaguugaguguguaauggcugugugugcgUGCCUGGCUCCCUGUAUGCCAuuugcaagagcucaucaacacaguuuugauggggcuugguggaugGCGUACUGAGUAGCCAUGCAUGcuuauaacuaccauuaacuccuccauucauuuauccccaaccaaccauucccuuccuuccuacuggcaccaaugcugc
((.(((...((((.((((((.(((.((.(((((((((..(((((.(((.(.(((((((..(((((.((((((.((((((.(.(((((((((((((..(((((((((((.......))))).)))))).))))))))))))).).).))))).)))))).))).))..))))).)).)))).)))))..........))).)))))).))..)))..)))))).))))...)))))
((.(((...((((.((((((.(((.((.(((((((((..(((((.(((.(.(((((((..(((((.((((((.((((((.(.(((((((((((((..(((((((((((.......))))).)))))).))))))))))))).).).))))).)))))).))).))..))))).)).)))).)))))..........))).)))))).))..)))..)))))).))))...)))))
Structure
u uaa g -u -u u - --------gu u u u - cu - u C - C U aa - ca gc agc ggug cggugg ggg gg gguggu ggu ugagu gag g gu aaugg gu gug gcgUGC UGGCU C C GUAUGCCAuuugc gagcuc aucaa c || ||| |||| |||||| ||| || |||||| ||| ||||| ||| | || ||||| || ||| |||||| ||||| | | ||||||||||||| |||||| ||||| a cg ucg ccac gucauc ucc cc uuacca cca acuua cuc c ca uuacc ca uau cGUACG ACCGA G G CAUGCGguaggug uucggg uaguu g - uaa g cu uu c a accccuauuu c - u a au a u U U A U -g g uu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Unknown
Database links
Mature lus-miR160d-5p
| Accession | MIMAT0027171 |
| Description | Linum usitatissimum lus-miR160d-5p mature miRNA |
| Sequence | 70 - UGCCUGGCUCCCUGUAUGCCA - 90 |
| Evidence | not_experimental |
Mature lus-miR160d-3p
| Accession | MIMAT0058396 |
| Description | Linum usitatissimum lus-miR160d-3p mature miRNA |
| Sequence | 136 - GCGUACUGAGUAGCCAUGCAUG - 157 |
| Evidence |
experimental
unknown |
References
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