Stem-loop lus-MIR397a

Accession

MI0021190

Description

Linum usitatissimum lus-MIR397a precursor miRNA

Literature search

2 open access papers mention lus-MIR397a
(17 sentences)

Sequence

153859 reads, 27134.0 reads per million, 24 experiments

gaucagagagaccuuAUUGAGUGCAGCGUUGAUGAAguucguucauucucagaucuUCAGCAACGCUGCUCUCGAUAauguaucuuuuuauc
....(((((.((.((((((((.(((((((((.(((((.((...........)).))))).))))))))).)))))))).)).))))).....

Structure

-gauc     g  c        U         A     u  guuc 
     agaga ac uuAUUGAG GCAGCGUUG UGAAg uc    a
     ||||| || |||||||| ||||||||| ||||| ||    u
     uuucu ug aAUAGCUC CGUCGCAAC ACUuc ag    u
cuauu     a  u        U         G     u  acuc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR397a-5p

• Accession: MIMAT0027170
• Description: Linum usitatissimum lus-miR397a-5p mature miRNA
• Sequence: 16 - AUUGAGUGCAGCGUUGAUGAA - 36
• Evidence: not_experimental

Mature lus-miR397a-3p

• Accession: MIMAT0058395
• Description: Linum usitatissimum lus-miR397a-3p mature miRNA
• Sequence: 57 - UCAGCAACGCUGCUCUCGAUA - 77
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161