Stem-loop lus-MIR530b

Accession

MI0021189

Description

Linum usitatissimum lus-MIR530b precursor miRNA

Literature search

1 open access papers mention lus-MIR530b
(5 sentences)

Sequence

982 reads, 259.0 reads per million, 24 experiments

uuugccUGCAUUUGCACCUGCACCUUauaaauauguacauacacucuucuucuucuucuucuucuucuucuuauguguguauauauguaagAGGUGCAGAGGCAAGUGCAAGugaa
.((((.(((((((((..(((((((((.((.(((((((((((((..............................))))))))))))).)).)))))))))..))))))))).)))).

Structure

u    c         AC         a  a             cucuucuucuucuu 
 uugc UGCAUUUGC  CUGCACCUU ua auauguacauaca              c
 |||| |||||||||  ||||||||| || |||||||||||||               
 aguG ACGUGAACG  GACGUGGAg au uauauaugugugu              u
a    A         GA         a  g             auucuucuucuucu 

Annotation confidence High

Genome context

Unknown

Mature lus-miR530b-5p

• Accession: MIMAT0027169
• Description: Linum usitatissimum lus-miR530b-5p mature miRNA
• Sequence: 7 - UGCAUUUGCACCUGCACCUU - 26
• Evidence: not_experimental

Mature lus-miR530b-3p

• Accession: MIMAT0058394
• Description: Linum usitatissimum lus-miR530b-3p mature miRNA
• Sequence: 92 - AGGUGCAGAGGCAAGUGCAAG - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161