Stem-loop lus-MIR166a

Accession

MI0021188

Description

Linum usitatissimum lus-MIR166a precursor miRNA

Literature search

2 open access papers mention lus-MIR166a
(5 sentences)

Sequence

1400168 reads, 246941.0 reads per million, 24 experiments

gaaagaaagaagcuuguguuuuuuguggGGAAUAUUGUCUGGUCCAAGGcuagcuagcuagcuagcuagugguaguggugaucugcucaguuacuccUCGGACCAGGCUUCAUUCCCCucaacuacucuugcucuugcuuc
..(((.((((.((..(.((...(((.(((((((...(((((((((...(((((((((....)))))))))((.((((((((.....))).)))))))..)))))))))...))))))).)))..)).)..)))))).))).

Structure

ga   a    a  uu u  uuu   u       AUU         --------------------------AAG         c 
  aag aaga gc  g gu   uug ggGGAAU   GUCUGGUCC                             Gcuagcuag u
  ||| |||| ||  | ||   ||| |||||||   |||||||||                             |||||||||  
  uuc uucu cg  c ca   aac CCCCUUA   CGGACCAGG                             ugaucgauc a
-c   g    -  uu u  -uc   u       CUU         CUccucauugacucgucuaguggugaugg         g 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166a-5p

• Accession: MIMAT0058393
• Description: Linum usitatissimum lus-miR166a-5p mature miRNA
• Sequence: 29 - GGAAUAUUGUCUGGUCCAAGG - 49
• Evidence: experimental ; unknown

Mature lus-miR166a-3p

• Accession: MIMAT0027168
• Description: Linum usitatissimum lus-miR166a-3p mature miRNA
• Sequence: 98 - UCGGACCAGGCUUCAUUCCCC - 118
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161