Stem-loop lus-MIR390a

Accession

MI0021187

Description

Linum usitatissimum lus-MIR390a precursor miRNA

Literature search

1 open access papers mention lus-MIR390a
(23 sentences)

Sequence

31709 reads, 4890.0 reads per million, 24 experiments

gauucagagaagauucaaaguauaggaagaaucuguaAAGCUCAGGAGGGAUAGCGCCauuggauccugaccuuacacguauggauucauggauucuggCGCUAUCCAUCCUGAGUUUCauggcuucuucuugcucucccaacacccauucuucuucuucuuauc
(((...(((((((.....((..(((((((((.((((.((((((((((.(((((((((((..(((((((((((..........))..))).))))))))))))))))).)))))))))).)))).)))))))))..))...............)))))))...)))

Structure

   uca       ----------uucaa  ua         u    a          G           uu      -   --  uuac 
gau   gagaaga               ag  uaggaagaa cugu AAGCUCAGGA GGAUAGCGCCa  ggaucc uga  cc    a
|||   |||||||               ||  ||||||||| |||| |||||||||| |||||||||||  |||||| |||  ||     
cua   uucuucu               uc  guucuucuu ggua UUUGAGUCCU CCUAUCGCggu  cuuagg acu  gg    c
   uuc       ucuuacccacaaccc  uc         c    C          A           --      u   ua  uaug 

Annotation confidence High

Genome context

Unknown

Mature lus-miR390a-5p

• Accession: MIMAT0027167
• Description: Linum usitatissimum lus-miR390a-5p mature miRNA
• Sequence: 38 - AAGCUCAGGAGGGAUAGCGCC - 58
• Evidence: not_experimental

Mature lus-miR390a-3p

• Accession: MIMAT0058392
• Description: Linum usitatissimum lus-miR390a-3p mature miRNA
• Sequence: 100 - CGCUAUCCAUCCUGAGUUUC - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161