Stem-loop lus-MIR162a

Accession

MI0021186

Description

Linum usitatissimum lus-MIR162a precursor miRNA

Literature search

2 open access papers mention lus-MIR162a
(3 sentences)

Sequence

159444 reads, 23738.0 reads per million, 24 experiments

gaaggguugugaugauugaugagagagggaacacacggaguuuGGAGGCAGCGGUUCAUCGAUCucuucaugguuucuguggguuccucacacaaaaacacgugaaucgaUCGAUAAACCUCUGCAUCCAGcaacccccuaguuccucccucccuccccaugaaucuguagcuuc
...((((((.(((...((..(((.((((((..((..((.(((((((.((((.((((.(((((((..((((((((((.((((((...))))))...)))).))))))..))))))).)))).)))).))))..))).))...))...)))))).)))..))...)))..)))))).

Structure

gaa      -u   gau  au   a      -ac  -ac  a   --    G    C    C       uc      -    --c      u 
   ggguug  gau   ug  gag gaggga   ac   gg guu  uGGA GCAG GGUU AUCGAUC  uucaug guuu   uguggg  
   ||||||  |||   ||  ||| ||||||   ||   || |||  |||| |||| |||| |||||||  |||||| ||||   |||||| u
   uucgau  cua   ac  cuc cucccu   ug   cc caa  ACCU CGUC CCAA UAGCUag  aagugc caaa   acacuc  
--c      gu   agu  cc   c      ccu  auc  c   cG    A    U    A       cu      a    aac      c 

Annotation confidence High

Genome context

Unknown

Mature lus-miR162a-5p

• Accession: MIMAT0058391
• Description: Linum usitatissimum lus-miR162a-5p mature miRNA
• Sequence: 44 - GGAGGCAGCGGUUCAUCGAUC - 64
• Evidence: experimental ; unknown

Mature lus-miR162a-3p

• Accession: MIMAT0027166
• Description: Linum usitatissimum lus-miR162a-3p mature miRNA
• Sequence: 111 - UCGAUAAACCUCUGCAUCCAG - 131
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161