Stem-loop lus-MIR172d

Accession

MI0021184

Description

Linum usitatissimum lus-MIR172d precursor miRNA

Literature search

1 open access papers mention lus-MIR172d
(1 sentences)

Sequence

1208 reads, 207.0 reads per million, 24 experiments

gcgagcgugagucguuguuugCUGGCGUGGCAUCAUCAAGAUucacauguaaagcuaguagcuaauacuaccccggccaguaguaggacauggacugaugAGAAUCUUGAUGAUGCUGCAUcggcagucgacgacugcauacgaaaagu
.((...(((((((((((.(((((((.((((((((((((((((((.((((((.((((...))))..))).....((((((((......)).))).)))))).)))))))))))))))))).))))))).)))))))).))).))......

Structure

-----g  agc   -        u       C                  a   guaaagcuaguagcuaauacuaccc   -   -  ag 
      cg   gug agucguug uugCUGG GUGGCAUCAUCAAGAUuc cau                         cgg cca gu  u
      ||   ||| |||||||| ||||||| |||||||||||||||||| |||                         ||| ||| ||   
      gc   uac ucagcagc gacggcU CGUCGUAGUAGUUCUAAG gua                         guc ggu ca  a
ugaaaa  --a   g        u       A                  A   -------------------------   a   a  gg 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR172d-5p

• Accession: MIMAT0058390
• Description: Linum usitatissimum lus-miR172d-5p mature miRNA
• Sequence: 22 - CUGGCGUGGCAUCAUCAAGAU - 42
• Evidence: experimental ; unknown

Mature lus-miR172d-3p

• Accession: MIMAT0027164
• Description: Linum usitatissimum lus-miR172d-3p mature miRNA
• Sequence: 101 - AGAAUCUUGAUGAUGCUGCAU - 121
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161