Stem-loop lus-MIR171f

Accession

MI0021183

Description

Linum usitatissimum lus-MIR171f precursor miRNA

Literature search

3 open access papers mention lus-MIR171f
(6 sentences)

Sequence

2105 reads, 454.0 reads per million, 23 experiments

gaaaggCGAUAUUGGUGGGGUUCAAUCcgaugacggauuuuuacaucaaggcgcaugcauaguaaacuacgaucucAGAUUGAGCCGCGCCAAUAUCacuuuuc
((((((.((((((((((.(((((((((.((.((((....(((((......((....))...)))))...)).)))).))))))))).)))))))))).))))))

Structure

      C          G         c  u  -  gauu     aucaag  g 
gaaagg GAUAUUGGUG GGUUCAAUC ga ga cg    uuuac      gc c
|||||| |||||||||| ||||||||| || || ||    |||||      ||  
cuuuuc CUAUAACCGC CCGAGUUAG cu cu gc    aaaug      cg a
      a          G         A  -  a  -auc     ---aua  u 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR171f-5p

• Accession: MIMAT0058389
• Description: Linum usitatissimum lus-miR171f-5p mature miRNA
• Sequence: 7 - CGAUAUUGGUGGGGUUCAAUC - 27
• Evidence: experimental ; unknown

Mature lus-miR171f-3p

• Accession: MIMAT0027163
• Description: Linum usitatissimum lus-miR171f-3p mature miRNA
• Sequence: 77 - AGAUUGAGCCGCGCCAAUAUC - 97
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161