Stem-loop lus-MIR530a

Accession

MI0021182

Description

Linum usitatissimum lus-MIR530a precursor miRNA

Literature search

1 open access papers mention lus-MIR530a
(5 sentences)

Sequence

628 reads, 121.0 reads per million, 24 experiments

agccaauuuguugccuuugccUGCAUUUGCACCUGCACCUUauaaauauguacaauguaagAGGUGCAGAGGCAAGUGCAAGugaaugccauuuuggcu
((((((..((..((.(((((.(((((((((..(((((((((....((((.....))))..)))))))))..))))))))).))))).))))..))))))

Structure

      uu  uu  c     c         AC         auaa    g 
agccaa  ug  gc uuugc UGCAUUUGC  CUGCACCUU    auau u
||||||  ||  || ||||| |||||||||  |||||||||    |||| a
ucgguu  ac  cg aaguG ACGUGAACG  GACGUGGAg    ugua c
      uu  --  u     A         GA         --aa    a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR530a-5p

• Accession: MIMAT0027162
• Description: Linum usitatissimum lus-miR530a-5p mature miRNA
• Sequence: 22 - UGCAUUUGCACCUGCACCUU - 41
• Evidence: not_experimental

Mature lus-miR530a-3p

• Accession: MIMAT0058388
• Description: Linum usitatissimum lus-miR530a-3p mature miRNA
• Sequence: 62 - AGGUGCAGAGGCAAGUGCAAG - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161