Stem-loop lus-MIR156b

Accession

MI0021181

Description

Linum usitatissimum lus-MIR156b precursor miRNA

Literature search

3 open access papers mention lus-MIR156b
(9 sentences)

Sequence

11153 reads, 2028.0 reads per million, 24 experiments

uuagaggagaugaagguuuuggguugagagcccuuuugggauauguugUUGACAGAAGAUAGAGAGCACAgaagaugaugggauacaauugauaguaucucacuuccuuuguGCUCUCUAUGUUUCUGUCAUCAccuguucgggccucuuccauccuuccucuuuuucga
...(((((((.(((((...((((..(((.((((.....(((((.((.(.(((((((((((((((((((((((.((.(.((((((((........))))))))).)).)))))))))))))).))))))))).))).)))))))))))).)))).))))).)))))))...

Structure

uua       u     uuu    uu   a    uuuug     u  u U         -              a  u a        aau 
   gaggaga gaagg   uggg  gag gccc     ggaua gu g UGACAGAAG AUAGAGAGCACAga ga g ugggauac   u
   ||||||| |||||   ||||  ||| ||||     ||||| || | ||||||||| |||||||||||||| || | ||||||||    
   uuuuucu cuucc   accu  cuc cggg     cuugu cA C ACUGUCUUU UAUCUCUCGuguuu cu c acucuaug   g
agc       c     --u    -u   -    -----     c  - U         G              c  u -        aua 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR156b-5p

• Accession: MIMAT0027161
• Description: Linum usitatissimum lus-miR156b-5p mature miRNA
• Sequence: 49 - UUGACAGAAGAUAGAGAGCACA - 70
• Evidence: not_experimental

Mature lus-miR156b-3p

• Accession: MIMAT0058387
• Description: Linum usitatissimum lus-miR156b-3p mature miRNA
• Sequence: 113 - GCUCUCUAUGUUUCUGUCAUCA - 134
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161