Stem-loop lus-MIR398b

Accession

MI0021180

Description

Linum usitatissimum lus-MIR398b precursor miRNA

Literature search

3 open access papers mention lus-MIR398b
(14 sentences)

Sequence

3798 reads, 742.0 reads per million, 24 experiments

ucaugucucUGUGUUCUCAGGUCACCCCUcugggucaccuuauuucuacauuuccaucucaaauucuauuuucuuauauuuauucgggagcgacguugagacacauacguucucgaaagauaucuaaacaaauaugguuagauccagaggggugcaacCUGAAAACACAGACGACGGA
((.((((((((((((.(((((((((((((((((((((((.(((((...............(((......)))...((((((.(((((((((((.((......)).).))))))))))))))))......))))).)))..))))))))))))))..)))))).)))))))).))))))

Structure

  a    -        C      --              --   u     cuacauuuccaucucaaauucuauuuucuu      a          - c  ug 
uc uguc ucUGUGUU UCAGGU  CACCCCUcuggguc  acc uauuu                              auauuu uucgggagcg a gu  a
|| |||| |||||||| ||||||  ||||||||||||||  ||| |||||                              |||||| |||||||||| | ||   
AG GCAG AGACACAA AGUCca  guggggagaccuag  ugg auaaa                              uauaga aagcucuugc u ca  g
  -    C        A      ac              au   u     ------------------------caaauc      -          a a  ca 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR398b-5p

• Accession: MIMAT0027160
• Description: Linum usitatissimum lus-miR398b-5p mature miRNA
• Sequence: 10 - UGUGUUCUCAGGUCACCCCU - 29
• Evidence: not_experimental

Mature lus-miR398b-3p

• Accession: MIMAT0058386
• Description: Linum usitatissimum lus-miR398b-3p mature miRNA
• Sequence: 159 - CUGAAAACACAGACGACGGA - 178
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161