Stem-loop lus-MIR399e

Accession

MI0021176

Description

Linum usitatissimum lus-MIR399e precursor miRNA

Literature search

1 open access papers mention lus-MIR399e
(18 sentences)

Sequence

gcaacgaucuuguauggaugcauuacagggcaauuacucccuuggcagauagcuauaguacuagcuaaauugagcaaacaaguacaguaagcucacUGCCAAAGGAGAUUUGCCCGGcaauucaacccuauuacguacuagc
...(((.....(((.((.((.(((.(.((((((.(.((((.(((((((..((((((.(((((.(((......))).....))))).)).))))..))))))).))))).)))))).).))).)).)).)))..)))......

Structure

---gca   aucuu   u  a  c   a a      u a    c       au    -  a     ----a   aa 
      acg     gua gg ug auu c gggcaa u cucc uuggcag  agcu au guacu     gcu  a
      |||     ||| || || ||| | |||||| | |||| |||||||  |||| || |||||     |||   
      ugc     uau cc ac uaa G CCCGUU A GAGG AACCGUc  ucga ug cauga     cga  u
cgauca   ---au   c  a  u   c G      U -    A       ac    a  a     acaaa   gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR399e

• Accession: MIMAT0027156
• Description: Linum usitatissimum lus-miR399e mature miRNA
• Sequence: 97 - UGCCAAAGGAGAUUUGCCCGG - 117
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161