Stem-loop lus-MIR399b

Accession

MI0021173

Description

Linum usitatissimum lus-MIR399b precursor miRNA

Literature search

1 open access papers mention lus-MIR399b
(19 sentences)

Sequence

151 reads, 37.0 reads per million, 18 experiments

gaguaguagugaagaauaacaGUGCAAUACUCCAUUGGCAGGaaauauuaugaugaugaauuguauaugguuucUGCCAAAGGAGAAUUGCCCUGcaauucauucaacuaccc
.....((((((((((((..(((.(((((.((((.((((((((((.(((((((((.....)))))).))).)))))))))).)))).))))).)))..)))).))).)))))..

Structure

gagua     -   -    aa   U     A    A          a   -      g 
     guagu gaa gaau  caG GCAAU CUCC UUGGCAGGaa uau uaugau a
     ||||| ||| ||||  ||| ||||| |||| |||||||||| ||| |||||| u
     cauca cuu cuua  GUC CGUUA GAGG AACCGUcuuu gua auguua g
---cc     a   a    ac   C     A    A          g   u      a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR399b-5p

• Accession: MIMAT0058385
• Description: Linum usitatissimum lus-miR399b-5p mature miRNA
• Sequence: 22 - GUGCAAUACUCCAUUGGCAGG - 42
• Evidence: experimental ; unknown

Mature lus-miR399b-3p

• Accession: MIMAT0027153
• Description: Linum usitatissimum lus-miR399b-3p mature miRNA
• Sequence: 75 - UGCCAAAGGAGAAUUGCCCUG - 95
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161