Stem-loop lus-MIR399a

Accession

MI0021172

Description

Linum usitatissimum lus-MIR399a precursor miRNA

Literature search

1 open access papers mention lus-MIR399a
(19 sentences)

Sequence

122 reads, 30.0 reads per million, 23 experiments

agaaugAAUGAGUGUCGGAGUUGAGAAAUCacagggcaaguaccucuauuggcaggcagucacuuagacauauguacuaauuuuucaauuugucuaagugcauugucUGCCAAAGGAGAUUUGCCCGGcgauucuuccacugcuuaucgaaacauguuccgucu
(((..(((((.((.(((((((.(((.((((.(.((((((((..((((.((((((((((((((((((((((.((..............)).)))))))))).)))))))))))).)))))))))))).).)))).))).))).....)))).)).)))))..)))

Structure

   au     A  G    -----   U   A    a a        ac    a            -          u  guacua 
aga  gAAUG GU UCGG     AGU GAG AAUC c gggcaagu  cucu uuggcaggcagu cacuuagaca au      a
|||  ||||| || ||||     ||| ||| |||| | ||||||||  |||| |||||||||||| |||||||||| ||       
ucu  cuugu ca agcu     uca cuu uuag G CCCGUUUA  GAGG AACCGUcuguua gugaaucugu ua      u
   gc     a  a    auucg   c   c    c G        --    A            c          u  acuuuu 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR399a-5p

• Accession: MIMAT0058384
• Description: Linum usitatissimum lus-miR399a-5p mature miRNA
• Sequence: 7 - AAUGAGUGUCGGAGUUGAGAAAUC - 30
• Evidence: experimental ; unknown

Mature lus-miR399a-3p

• Accession: MIMAT0027152
• Description: Linum usitatissimum lus-miR399a-3p mature miRNA
• Sequence: 108 - UGCCAAAGGAGAUUUGCCCGG - 128
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161