Stem-loop lus-MIR160c

Accession

MI0021171

Description

Linum usitatissimum lus-MIR160c precursor miRNA

Literature search

2 open access papers mention lus-MIR160c
(5 sentences)

Sequence

163 reads, 43.0 reads per million, 24 experiments

ggaguguuugaacaaaaagugugguccUGCCUGGCUCCCUGGAUGCCAucuaagcagcuuuucaaaaggguguuuggaaaCCUUUUUAGUUGGCAUGAGGGACGccaugcaggccguucauucguuuuucucauccauuagucuucauucc
((((((...(((.((..(((((((.(((((.(((((((((..((((((.(((((.((.((((((((......)))))))).)).))))).)))))).))))).)))).))))))))..))))..)).)))...............))))))

Structure

      ------------uuu   c  aa    --   u     C    -     GG      u     c  c        ag 
ggagug               gaa aa  agug  ugg ccUGC UGGC UCCCU  AUGCCA cuaag ag uuuucaaa  g
||||||               ||| ||  ||||  ||| ||||| |||| |||||  |||||| ||||| || ||||||||   
ccuuac               cuu uu  uuac  gcc ggacg accG AGGGA  UACGGU GAUUU UC aaagguuu  g
      uucugauuaccuacu   u  gc    uu   -     u    C     -G      U     U  C        gu 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR160c-5p

• Accession: MIMAT0027151
• Description: Linum usitatissimum lus-miR160c-5p mature miRNA
• Sequence: 28 - UGCCUGGCUCCCUGGAUGCCA - 48
• Evidence: not_experimental

Mature lus-miR160c-3p

• Accession: MIMAT0058383
• Description: Linum usitatissimum lus-miR160c-3p mature miRNA
• Sequence: 81 - CCUUUUUAGUUGGCAUGAGGGACG - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161