Stem-loop lus-MIR160b

Accession

MI0021170

Description

Linum usitatissimum lus-MIR160b precursor miRNA

Literature search

2 open access papers mention lus-MIR160b
(6 sentences)

Sequence

14888 reads, 2920.0 reads per million, 24 experiments

gguggugaguuaguguguaaugugugugcgUGCCUGGCUCCCUGUAUGCCAuuugcaagagcucaucaacacaguuuugauggggcuugguggaugGCGUACUGAGUAGCCAUGCAUGccuaacuaucauugcuccaaaucuaacuucuccauu
.((((.(((((((((.((((((.((..((((((.((((((.(.(((((((((((((..(((((((((((.......))))).)))))).))))))))))))).).).))))).))))))...))...))))))..))...)))))))..)))).

Structure

g    -u       ---  -u      --u  -gu      C     - C U             aa      -     ca 
 gugg  gaguuag   ug  guaaug   gu   gcgUGC UGGCU C C GUAUGCCAuuugc  gagcuc aucaa  c
 ||||  |||||||   ||  ||||||   ||   |||||| ||||| | | |||||||||||||  |||||| |||||  a
 uacc  uucaauc   ac  cguuac   ca   cGUACG ACCGA G G CAUGCGguaggug  uucggg uaguu  g
u    uc       uaa  cu      uau  auc      U     U A U             -g      g     uu 

Annotation confidence High

Genome context

Unknown

Mature lus-miR160b-5p

• Accession: MIMAT0027150
• Description: Linum usitatissimum lus-miR160b-5p mature miRNA
• Sequence: 31 - UGCCUGGCUCCCUGUAUGCCA - 51
• Evidence: not_experimental

Mature lus-miR160b-3p

• Accession: MIMAT0058382
• Description: Linum usitatissimum lus-miR160b-3p mature miRNA
• Sequence: 97 - GCGUACUGAGUAGCCAUGCAUG - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161