Stem-loop lus-MIR171e

Accession

MI0021169

Description

Linum usitatissimum lus-MIR171e precursor miRNA

Literature search

3 open access papers mention lus-MIR171e
(6 sentences)

Sequence

6006 reads, 1200.0 reads per million, 24 experiments

uuuucuucuuguacauaaugaaaggcgucacugcggUAUUGGCCCGGUUCACUCAGAcacaguacauguuauuauuuguuUGAUUGAGCCGUGCCAAUAUCucaaugcaccuuucauccccgaaagaaaa
.....(((((.......((((((((.(.((.((.(((((((((.(((((((.(((((((.((((........))))))))))).))))))).))))))))).)).))).))))))))......)))))..

Structure

uuuuc     guacaua        c u  c  c         C       C       c    cau 
     uucuu       augaaagg g ca ug ggUAUUGGC CGGUUCA UCAGAca agua   g
     |||||       |||||||| | || || ||||||||| ||||||| ||||||| ||||    
     aagaa       uacuuucc c gu ac CUAUAACCG GCCGAGU AGUuugu uuau   u
---aa     -agcccc        a -  a  u         U       U       -    uau 

Annotation confidence High

Genome context

Unknown

Mature lus-miR171e-5p

• Accession: MIMAT0058381
• Description: Linum usitatissimum lus-miR171e-5p mature miRNA
• Sequence: 37 - UAUUGGCCCGGUUCACUCAGA - 57
• Evidence: experimental ; unknown

Mature lus-miR171e-3p

• Accession: MIMAT0027149
• Description: Linum usitatissimum lus-miR171e-3p mature miRNA
• Sequence: 81 - UGAUUGAGCCGUGCCAAUAUC - 101
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161