Stem-loop lus-MIR169f

Accession

MI0021168

Description

Linum usitatissimum lus-MIR169f precursor miRNA

Literature search

2 open access papers mention lus-MIR169f
(10 sentences)

Sequence

479 reads, 119.0 reads per million, 24 experiments

ugauuuugcgaaguagaacauaggccugagaugaagacggagagagcgugguuCAGCCAAGGAUGACUUGCCGGACGGcuagcuccgguugucagcuccaucgucggcaaguugUUCUUGGCUACAUUGCGCUCAcuuguucucauuucagaccucucuauguucucccauuuggcaacuuca
(((..((((.((((((((((((((.(((((((((.((..(((.(((((((((..(((((((((((((((((((.((((..((((.........))))...)))))))))))))))))))))))..))))))))).)))..))))))))))).)))....)))))))...)))).))))..)))

Structure

   uu    g    ---       ----   c         a  cg   a         uC                   G    -cu    ccg 
uga  uugc aagu   agaacau    agg cugagauga ga  gag gagcguggu  AGCCAAGGAUGACUUGCCG ACGG   agcu   g
|||  |||| ||||   |||||||    ||| ||||||||| ||  ||| |||||||||  ||||||||||||||||||| ||||   ||||   u
acu  aacg uuua   ucuugua    ucc gacuuuacu cu  uuc CUCGCGUUA  UCGGUUCUUguugaacggc ugcu   ucga   u
   uc    g    ccc       ucuc   a         -  ug   A         CA                   -    acc    cug 

Annotation confidence Low

Genome context

Unknown

Mature lus-miR169f-5p

• Accession: MIMAT0027148
• Description: Linum usitatissimum lus-miR169f-5p mature miRNA
• Sequence: 54 - CAGCCAAGGAUGACUUGCCGGACGG - 78
• Evidence: not_experimental

Mature lus-miR169f-3p

• Accession: MIMAT0058380
• Description: Linum usitatissimum lus-miR169f-3p mature miRNA
• Sequence: 115 - UUCUUGGCUACAUUGCGCUCA - 135
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161