Stem-loop lus-MIR398a

Accession

MI0021167

Description

Linum usitatissimum lus-MIR398a precursor miRNA

Literature search

3 open access papers mention lus-MIR398a
(21 sentences)

Sequence

640930 reads, 124193.0 reads per million, 24 experiments

uuguggaugauucuuaccGGGUCGACUAGAGAACACACGaagagagguccgcaacgaaugagguguuucauuucacuuuccugUGUGUUCUCAGGUCGCCCCUGcaagauuuccuucacaa
.((((((.((.((((.(.(((.(((((.(((((((((((..(((((............(((((((...)))))))))))).))))))))))).))))).))).).))))..)).)))))).

Structure

u      u  -u    a c   U     A           aa     guccgcaacgaa       u 
 ugugga ga  ucuu c GGG CGACU GAGAACACACG  gagag            ugaggug  
 |||||| ||  |||| | ||| ||||| |||||||||||  |||||            ||||||| u
 acacuu cu  agaa G CCC GCUGG CUCUUGUGUgu  cuuuc            acuuuac  
a      c  uu    c U   C     A           -c     ------------       u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR398a-5p

• Accession: MIMAT0058379
• Description: Linum usitatissimum lus-miR398a-5p mature miRNA
• Sequence: 19 - GGGUCGACUAGAGAACACACG - 39
• Evidence: experimental ; unknown

Mature lus-miR398a-3p

• Accession: MIMAT0027147
• Description: Linum usitatissimum lus-miR398a-3p mature miRNA
• Sequence: 84 - UGUGUUCUCAGGUCGCCCCUG - 104
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161