Stem-loop lus-MIR171d

Accession

MI0021166

Description

Linum usitatissimum lus-MIR171d precursor miRNA

Literature search

3 open access papers mention lus-MIR171d
(6 sentences)

Sequence

15190 reads, 2412.0 reads per million, 21 experiments

gucugguguacgAGAUAUUGGUGCGGUUCAAUCagagagcacgucuccuacgcacaucgaaaugggggaugcuauucgaUUGAGCCGCGUCAAUAUCCCGuguuccucac
....((..((((.((((((((((((((((((((.(((((((..(((((((((.....))...))))))))))).))))))))))))))))))))))).))))..))....

Structure

gucu  ug    A                    a   -    cg       ---  c 
    gg  uacg GAUAUUGGUGCGGUUCAAUC gag agca  ucuccua   cg a
    ||  |||| |||||||||||||||||||| ||| ||||  |||||||   || c
    cc  guGC CUAUAACUGCGCCGAGUUag cuu ucgu  agggggu   gc a
cacu  uu    C                    -   a    --       aaa  u 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR171d-5p

• Accession: MIMAT0027146
• Description: Linum usitatissimum lus-miR171d-5p mature miRNA
• Sequence: 13 - AGAUAUUGGUGCGGUUCAAUC - 33
• Evidence: not_experimental

Mature lus-miR171d-3p

• Accession: MIMAT0058378
• Description: Linum usitatissimum lus-miR171d-3p mature miRNA
• Sequence: 80 - UUGAGCCGCGUCAAUAUCCCG - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161